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Table 1 Description of the 44 FEATURE properties

From: Clustering protein environments for function prediction: finding PROSITE motifs in 3D

Dimension Description Dimension Description
1 Aliphatic carbon 23 Residue name is ALA
2 Aromatic carbon 24 Residue name is ARG
3 Carbon with partial positive charge 25 Residue name is ASN
4 Aliphatic carbon next to a polar atom 26 Residue name is ASP
5 Amide carbon 27 Residue name is CYS
6 Carboxyl carbon 28 Residue name is GLN
7 Amide nitrogen 29 Residue name is GLU
8 Positively charged nitrogen 30 Residue name is GLY
9 Aromatic nitrogen 31 Residue name is HIS
10 Amide oxygen 32 Residue name is ILE
11 Carboxyl oxygen 33 Residue name is LEU
12 Hydroxyl oxygen 34 Residue name is LYS
13 Sulfur 35 Residue name is MET
14 Partial charge 36 Residue name is PHE
15 Van der Waals volume 37 Residue name is PRO
16 Charge 38 Residue name is SER
17 Negative charge 39 Residue name is THR
18 Positive charge 40 Residue name is TRP
19 Charge on histidines 41 Residue name is TYR
20 Hydrophobicity 42 Residue name is VAL
21 Solvent accessibility 43 Residue name is HOH
22 Number of atoms 44 Residue name is other