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Table 1 Reconstruction accuracy on Yoruba and Daly data.

From: Constrained hidden Markov models for population-based haplotyping

Method

Yoruba-20

Yoruba-100

Yoruba-500

Daly

PHASE

0.027

0.025

n.a.

0.038

fastPHASE

0.033

0.031

0.034

0.027

SpaMM

0.034

0.037

0.040

0.033

HaploRec

0.036

0.038

0.046

0.034

fastPHASE-NA

0.041

0.060

0.069

0.045

HIT

0.042

0.050

0.055

0.031

GERBIL

0.044

0.051

n.a

0.034

  1. Normalized switch error is shown for the Daly dataset, and average normalized switch error over the 100 datasets in the Yoruba-20, Yoruba-100 and Yoruba-500 dataset collections.