From: A new pairwise kernel for biological network inference with support vector machines
 | MLPK | TPPK | MLPK + TPPK | Direct | |||
---|---|---|---|---|---|---|---|
Data | Accuracy | AUC | Accuracy | AUC | Accuracy | AUC | AUC |
Localization | 76.2 ± 1.0 | 76.9 ± 2.0 | 79.5 ± 1.8 | 82.9 ± 1.7 | 80.6 ± 0.7 | 83.0 ± 1.2 | 73.9 ± 1.4 |
Chip-chip | 82.2 ± 1.1 | 89.7 ± 0.8 | 63.8 ± 1.2 | 68.0 ± 1.1 | 84.4 ± 1.2 | 90.8 ± 1.2 | 58.4 ± 1.5 |
Pfam | 92.1 ± 0.9 | 98.0 ± 0.5 | 86.1 ± 1.0 | 91.8 ± 0.9 | 93.8 ± 0.3 | 98.5 ± 0.1 | 67.3 ± 1.2 |
PSI-BLAST | 89.0 ± 0.9 | 97.0 ± 0.1 | 88.3 ± 1.0 | 93.5 ± 0.9 | 93.1 ± 0.6 | 97.9 ± 0.2 | 67.8 ± 1.2 |
Sum | 93.6 ± 0.3 | 98.7 ± 0.2 | 94.1 ± 0.6 | 98.0 ± 0.3 | 95.8 ± 0.3 | 99.1 ± 0.3 | 79.9 ± 0.8 |
Pairwise sum | 93.3 ± 0.8 | 98.2 ± 0.4 | 90.5 ± 0.9 | 96.3 ± 0.7 | 95.2 ± 0.3 | 98.9 ± 0.2 | - |