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Table 4 Patterns for method 2, recognition of DNA regions stimulated by the type II IFN (IFNγ)

From: Recognition of interferon-inducible sites, promoters, and enhancers

Site 1

Site 2

W = F1/F2 (weight for the pattern)

strong STAT1 (-)

from -350 to +350

STAT1 (-)

from -350 to +350

20.00

STAT1 (-)

from -350 to +350

-

9.36

STAT1 (-)

from +130 to +350

-

4.22

strong IRF1 (b)

from -350 to +350

IRF1 (b)

from -350 to +350

10.0

IRF1 (-)

from -350 to +350

AP1 (b)

from -500 to +1

5.4

IRF1 (b)

from -650 to +350

GATA1 (b)

from -600 to +1

1.17

IRF1 (b)

from -200 to +50

NF-κB (b)

from -500 to +1

6.0

IRF1 (+)

from -500 to +1

OCT1 (b)

from -500 to +1

2.0

IRF1 (+)

from -350 to +350

TATA (+)

from -100 to +70

5.2

STAT1 (-)

from -350 to +350

strong IRF1 (b)

from -650 to +350

10.0

strong STAT1 (-)

from -350 to +350

STAT1 (-)

from -350 to +350

20.00

STAT1 (-)

from -350 to +350

-

9.36

STAT1 (-)

from +130 to +350

-

4.22

strong IRF1 (b)

from -350 to +350

IRF1 (b)

from -350 to +350

10.00

STAT1 (b)

from -500 to +1

strong IRF1 (b)

from -650 to +350

6.1

STAT1 (b)

from -500 to +1

ISGF3 (b)

from -500 to +1

2.1

STAT1 (+)

from -350 to +350

AP1 (b)

from -500 to +1

3.8

STAT1 (+)

from -300 to +1

OCT1 (b)

from -500 to +1

3.3

STAT1 (b)

from -350 to +350

NF-κB (b)

from -500 to +1

4.1

STAT1 (-)

from -130 to +350

TATA (+)

from -100 to +70

4.0

STAT1 (b)

from -300 to +1

TATA (+)

from -100 to +70

8.0

NF-κB (b)

from -500 to +1

AP1 (b)

from -500 to +1

5.4

  1. *b (both) - any direction of a site; + forward DNA strand; - reverse DNA strand;
  2. ** Location of a site with respect to the TSS