Skip to main content

Table 1 Locally over-represented PSSMs in the upstream sequences of 120 known NF-κB-regulated genes

From: In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells

Factor

Matrix ID

P-value (human)

P-value (mouse)

NF-κB

M00052

3.16e-08

2.75e-09

c-Rel

M00053

3.01e-07

2.64e-07

NF-κB

M00054

1.77e-04

1.55e-05

NF-κB

M00208

2.59e-04

1.07e-04

NF-κB

M00194

4.66e-04

3.13e-04

C/EBPβ

M00117

1.43e-02

2.44e-02

  1. Factor: name of the TF; Matrix ID: the TRANSFAC database identifier of the PSSM; P-value: statistical significance of the over-representation of the factor when compared to a background distribution of predicted binding sites in arbitrary human or mouse promoters (Chi square test).
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us