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Figure 8 | BMC Bioinformatics

Figure 8

From: WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

Figure 8

WeederH identifies the promoter and the annotated enhancer upstream of the human skeletal actin gene. Highest scoring motifs predicted by WeederH in the intergenic region upstream of the ATG codon of the human skeletal actin gene, displayed within the UCSC genome browser. Track "Weeder H motifs" shows the location of the motifs; the track "Weeder-H" 500 shows 500 bps regions in which the average 12-mer χ2 score is higher than 1. The two regions selected, are the promoter and an annotated enhancer located at about 1500 bps upstream of the TSS [47]. Track "Your sequence from Blat Search" shows the location of the original promoter retrieved from the ABS database.

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