Figure 1
From: WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
An example of the output of WeederH. An example of the output of WeederH, showing the highest scoring motifs in core promoter and first non-coding exon of the human p53 gene, compared to mouse and rat homologs. Motifs are displayed within the UCSC genome browser. Sites annotated in the TRANSFAC database are shown in green. The longest (and highest scoring) motif encompasses several adjacent sites. Regulatory potential (RP) score [27] and phastCons [45] tracks are also displayed (see Results), together with the motifs output by MEME [38] on the same dataset (run in "oops" mode).