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Table 6 External Metabolites Abbreviation

From: Estimation of the number of extreme pathways for metabolic networks

Exchange Metabolite Abbreviation

12dgr_m

1,2-Diacylglycerol

hx

Hypoxanthine

23dpg

2,3-Phospho-D-glyceroyl phosphate

hxan

Hypoxanthine

2dmmq8

2-Demethylmenaquinone 8

ile-L

L-Isoleucine

2dmmql8

2-Demethylmenaquinol 8

ino

Inosine

3pg

3-Phospho-D-glycerate

lac

Lactate

ac

Acetate

lac-L

L-Lactate

acac

Acetoacetate

leu-L

L-Leucine

acald

Acetaldehyde

lys-L

L-Lysine

ad

Acetamide

mal

Malate

ade

Adenine

mal-L

L-Malate

ado

Adenosine

meoh

Methanol

adp

ADP

mql8

Menaquinol 8

akg

2-Oxoglutarate

mqn8

Menaquinone 8

ala-L

L-Alanine

nad

Nicotinamide adenine dinucleotide

ala-S

S-Alanine

nadh

Nicotinamide adenine dinucleotide – reduced

amp

AMP

nadp

Nicotinamide adenine dinucleotide phosphate

arachd

Arachidonic Acid (C20:4)

nadph

Nicotinamide adenine dinucleotide phosphate – reduced

asp-L

L-Asparagine

nh3

Ammonium

atp

ATP

nh4

Ammonium Ion

bhb

(2)-3-Hydroxybuanoate

o2

O2

ch4

Methan

oaa

Oxaloacetate

co2

CO2

ocdc All

octadecanoate, octadecenoate, octadecynoate

coa

Coenzyme A

ocdca

octadecanoate

crvnc

Cervonic Acid (C22:6, n-3)

ocdcea

octadecenoate

cys-L

L-Cysteine

ocdcya

octadecynoate

e4p

D-Erythrose 4-phosphate

orn

Ornithine

etoh

Ethanol

pep

Phosphoenolpyruvate

fad

Flavin adenine dinucleotide

phe-L

L-Phenylalanine

fadh2

Flavin adenine dinucleotide (reduced form)

pheme

Protoheme

fe2

Iron (II)

phs-L

Phospholipid

fe3

Iron (III)

pi

Phosphate

for

Formate

ppi

Diphosphate

fum

Fumarate

pro-L

L-Proline

glc

Glucose

ps_m

Phosphatidylserine

glc-D

D-Glucose

pyr

Pyruvate

glu-L

L-Glutamate

q8

Ubiquinone-8

gly

Glycine

q8h2

Ubiquinol-8

glyc

Glycerol

r5p

alpha-D-Ribose 5-phosphate

glyc3p

Glycerol 3-phosphate

ser-L

L-Serine

gsn

Guanosine

so4

Sulfate

gua

Guanine

succ

Succinate

h

H+

thr-L

L-Threonine

h2

H2

trp-L

L-Tryptophan

h2co3

carbonic acid

tyr-L

L-Tyrosine

h2o

H2O

urea

Urea

hdca

Hexadecanoate (n-C16:0)

val-L

L-Valine

  1. Abbreviations of all external metabolite found in the 68 models used in this study.