Accuracy of structure-based sequence alignment of automatic methods

BMC Bioinformatics

Table 2 The largest CDD superfamily and the superfamilies for which all programs score poorly

Name	SCOP class	Pairs^‡	Sub-families^§	Description in CDD
cd00651	α+β	4	2	T-fold; Tunneling fold
cd01345	f^†	3	3	OM_channels; Porin superfamily
cd02156	α/β	291	3	nt_trans; nucleotidyl transferase
cd02184	α+β	51	4	AroH_like;YgbB family
cd02688	all-β	77	8	E_set; E or "early" set of sugar utilizing enzymes
cd00096	all-β	1424	3	IG: Immunoglobulin domain family

^† Membrane and cell surface proteins and peptides
^‡ Number of pairs in the root node set in each superfamily
^§ Number of immediate subfamilies contributing structure pairs to the root node set

ISSN: 1471-2105