Figure 7
From: Accuracy of structure-based sequence alignment of automatic methods
RMSD dependence of F car in the root node set. The structure pairs were superposed using the reference alignments to calculate the RMSDs. The test alignments were grouped into RMSD bins of size 0.5 Ã… and then the alignments within each bin were grouped according to its CD name for averaging. The avearge Fcar values are shown with the scale on the left y-axis: open symbols, Fcar(8); closed symbols, Fcar(0). The x-axis shows the midpoint of each RMSD bin. All the structure pairs with RMSD greater than 4.0 Ã… were collected in the last bin. The histogram (grey bars) shows the number of superfamilies in each bin with the scale on the right y-axis.