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Table 2 All most specific frequent patterns for family A

From: SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences

Pattern

Matches(No seq,1st position)

support

Total

AA

[1,7] [7,5]

2

2

AG

[1,1] [2,3] [2,5] [4,4] [6,4] [7,1]

4

6

AT

[3,6] [4,2] [5,5] [6,2]

2

4

A.A

[2,3] [3,6] [4,2] [6,2]

3

4

ATA

[3,6] [4,2] [6,2]

2

3

AGC

[1,1] [2,5] [7,1]

2

3

A..G

[2,3] [4,2] [4,4] [6,2] [7,1]

4

5

AG.G

[2,3] [4,4] [7,1]

3

3

ATAG

[4,2] [6,2]

2

2

A.AG

[2,3] [4,2] [6,2]

3

3

AG..C

[1,1] [2,3] [4,4]

2

3

AG.GC

[2,3] [4,4]

2

2

A....A

[3,3] [7,1]

2

2

  1. Bold patterns are the results of step 2.