Skip to main content

Table 2 Comparison of different hybrid approaches using cross-validation for the benchmark data sets.

From: Protein subcellular localization prediction based on compartment-specific features and structure conservation

 

PS1302

Localization

PSL101

PSLseq+PSL101

PSLsse+PSL101

 

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

CP

97.2 (94.8)

0.91 (0.89)

96.4 (94.4)

0.90 (0.89)

95.6 (94.4)

0.90 (0.90)

IM

94.4 (92.9)

0.95 (0.94)

93.3 (91.8)

0.95 (0.93)

93.3 (91.8)

0.94 (0.93)

PP

87.7 (88.1)

0.86 (0.84)

88.9 (88.9)

0.86 (0.85)

91.4 (91.0)

0.88 (0.88)

OM

94.3 (93.8)

0.94 (0.91)

95.5 (95.7)

0.96 (0.93)

96.3 (96.9)

0.96 (0.95)

EC

87.9 (83.2)

0.87 (0.84)

89.5 (85.8)

0.89 (0.87)

90.0 (87.9)

0.89 (0.89)

Overall

92.7 (91.2)

-

93.1 (91.9)

-

93.7 (92.9)

-

 

PS1444

Localization

PSL101

PSLseq+PSL101

PSLsse+PSL101

 

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

CP

96.0 (94.2)

0.91 (0.90)

94.6 (92.8)

0.89 (0.88)

95.0 (93.5)

0.91 (0.90)

IM

94.5 (92.6)

0.95 (0.94)

93.5 (91.6)

0.94 (0.93)

93.5 (91.6)

0.94 (0.93)

PP

85.1 (88.0)

0.82 (0.83)

87.0 (88.4)

0.84 (0.83)

90.2 (91.7)

0.86 (0.87)

OM

94.9 (93.9)

0.93 (0.91)

95.9 (95.7)

0.95 (0.93)

96.7 (96.4)

0.96 (0.95)

EC

82.6 (83.2)

0.83 (0.85)

87.9 (86.3)

0.87 (0.88)

87.4 (87.9)

0.87 (0.89)

Overall

91.6 (91.1)

-

92.4 (91.6)

-

93.2 (92.8)

-

  1. § The performance of incorporating a three-way data split procedure is indicated in the parentheses.