Table 4 Total number of PDB entries per ligand and matches against the generated 3D patterns
From: Automatic generation of 3D motifs for classification of protein binding sites
| Â | AMP | ADP | ATP | ANP | ACP | GMP | GDP | GTP |
|---|---|---|---|---|---|---|---|---|
PDB entries containing ligand | 128 | 406 | 234 | 125 | 29 | 27 | 199 | 77 |
Hits against the 13 patterns | 14.8% | 30.5% | 35.5% | 36.8% | 44.8% | 0.0% | 0.5% | 1.3% |
PDB50 entries in valid clusters | 16.0% | 30.8% | 23.3% | / | / | / | / | / |