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Figure 1 | BMC Bioinformatics

Figure 1

From: Evaluation of 3D-Jury on CASP7 models

Figure 1

Correlation of 3D-Jury score with the number of correctly predicted C α atoms. N C α 3.5 Å MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGobGtdaWgaaWcbaGaem4qam0aaSbaaWqaaGGaciab=f7aHbqabaWccqGHKjYOcqaIZaWmcqGGUaGlcqaI1aqntCvAUfeBSjuyZL2yd9gzLbvyNv2CaeHbhv2BYDwAHbaceiGaa4xXaaqabaaaaa@413E@ – the number of C α atoms predicted within 3.5 Å from their respective locations in the crystal structure; Jscore – 3J1,Ascore; solid green line – prediction of linear model LM1; blue longdash lines: confidence interval at 95% confidence level; blue dashed lines: prediction interval at 90% confidence level; blue dotdash lines: prediction interval at 95% confidence level; blue dotted lines: prediction interval at 99% confidence level; x – slope; the colour bar is key to the approximate density of models A linear model (LM1) was fitted to the 3D-Jury score vs. N C α 3.5 Å MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGobGtdaWgaaWcbaGaem4qam0aaSbaaWqaaGGaciab=f7aHbqabaWccqGHKjYOcqaIZaWmcqGGUaGlcqaI1aqntCvAUfeBSjuyZL2yd9gzLbvyNv2CaeHbhv2BYDwAHbaceiGaa4xXaaqabaaaaa@413E@ of 19,558 models. The residual standard error is 20.15. The 95% confidence interval as well as prediction intervals for 90%, 95% and 99% confidence levels are indicated on the figure. The vertical and horizontal histograms show the distributions of N C α 3.5 Å MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGobGtdaWgaaWcbaGaem4qam0aaSbaaWqaaGGaciab=f7aHbqabaWccqGHKjYOcqaIZaWmcqGGUaGlcqaI1aqntCvAUfeBSjuyZL2yd9gzLbvyNv2CaeHbhv2BYDwAHbaceiGaa4xXaaqabaaaaa@413E@ and 3D-Jury scores respectively.

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