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Table 9 43 Protein chains used in the study

From: Prediction of the burial status of transmembrane residues of helical membrane proteins

PDB ID

Protein

Chains

1. 1M0L

Bacteriorhodopsin

A

2. 1GZM

Rhodopsin

A

3. 1R3J

KcsA potassium channel

C

4. 1J4N

Aquaporin

A

5. 1LDF

Glycerol facilitator channel

A

6. 1XQF

Ammonia channel

A

7. 1OTS

H+/Cl- exchanger

A

8. 2A65

Leucine transporter

A

9. 2CFQ

Lactose permease

A

10. 1YEW

Methane monooxygenase

B, C

11. 1SU4

Calcium ATPase

A

12. 2BL2

Rotor of V-type Na+-ATPase

A

13. 1DXR

Photosynthetic reaction center

L, M, H

14. 1KF6

Fumarate reductase (E. coli)

C, D

15. 1QLA

Fumarate reductase (W. succinogenes)

C

16. 1KQF

Formate dehydrogenase N

B, C

17. 1Q16

Nitrate reductase A

C

18. 1NEK

Succinate dehydrogenase

C, D

19. 1ZOY

Complex II

C, D

20. 1OKC

Mitochondrial ADP/ATP carrier

A

21. 1V55

Cytochrome C oxidase (aa3 type)

B, D, G, I, J, L, M

22. 1EHK

Cytochrome C oxidase (ba3 type)

A, B

23. 1PP9

Cytochrome bc1 complex

D, E, G, J

24. 2GIF

AcrB multidrug efflux transporter

A

25. 2IC8

GlpG rhomboid-family intramembrane protease

A

26. 2NQ2

Putative metal-chelate-type ABC transporter

A