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Table 1 Databases used. Summary of databases mentioned in this analysis

From: Genome bioinformatic analysis of nonsynonymous SNPs

Database

Description

nsSNPs used for this study

Availability

dbSNP

Database of Single Nucleotide Polymorphisms

21471

[8]

OMIM

Online database of Mendelian Inherited dimorphisms in Man

2256

[15]

HapMap

Database quantifying frequencies of common haplotypes in four populations

5770

[3]

HGMD

Human Gene Mutation Database of mutations within the coding regions, splicing and regulatory regions of human genes causing inherited disease

N/A

[12]

GAD

Genetic association database of medically relevant polymorphisms identified in published scientific papers

N/A

[13]

HGVBase

Human Genome Variation Database

N/A

[6]

LS-SNP

Database of large scale annotation of predicted effects of human SNPs.

11220

[24]

Polyphen

Database of predicted functional effect of human nsSNPs

4459

[27]

HOMSTRAD

Database of protein structures classified by protein family

N/A

[40]