Table 1 Document sets (corpora) used in this work
From: Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
ID | Name | # of docs | size in MB | type | description | |
|---|---|---|---|---|---|---|
1 | RN | RegulonDB Network References | 724 | 24.9 | full-text | Full-text papers from the RegulonDB database references that curators have identified as referring specifically to the regulatory network, as opposed to those referring to other objects from the database. |
2 | RP | RegulonDB papers | 2,475 | 99 | full-text | Full text papers from the complete RegulonDB references that we were able to access and download. |
3 | RA | RegulonDB Abstracts | 3,075 | 3.3 | abstracts | Abstracts from the complete RegulonDB references, as of June of 2006. |
4 | RS | RegulonDB search strategies | 12,059 | 12.3 | abstracts | Corpus generated by using the RegulonDB curator's search strategies, without any subsequent filtering. |
5 | EA | EcoCyc Abstracts | 13,334 | 14.4 | abstracts | Abstracts from references in the 2006 EcoCyc database that describes the genome and the biochemical machinery of E. coli. |
6 | ST | STRING-IE | 58,312 | 10.7 | sentences | Corpus of distinct sentences generated by the STRING-IE team by searching in PubMed for "E. coli" (and synonyms), and two gene/protein names in the same abstract, from 195,000 abstracts. |