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Table 2 Comparison of AmiGO and UniProt annotations for 211 mouse protein kinases with RCA Evidence code. Each of the 211 mouse kinase proteins with an RCA evidence code used in this study has both an AmiGO and a UniProt annotation. This table shows the number of proteins that have each of the nine possible combinations of AmiGO and UniProt annotations. Each row of the table represents one of the three possible UniProt labels and each column represents each of the three AmiGO annotations. Each entry of the table shows the number of proteins with the corresponding annotation. Note that all entries along the diagonal (in bold) show the number of proteins for which the AmiGO and UniProt annotations were in agreement. All other entries show the number of proteins where AmiGO and UniProt were in disagreement [see Additional files 2 and 3].

From: Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

KINASE FAMILY

AmiGO Ser/Thr

AmiGO Tyr

AmiGO Dual specificity

UniProt Ser/Thr

10

105

35

UniProt Tyr

54

0

3

UniProt Dual specificity

0

4

0