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Table 3 Inconsistencies in probe to gene annotations.

From: AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs

Gene Chip

Total no. of probes

Total no. of un-mapped probes

Un-mapped probes belonging to

% Un-mapped probes

   

Total no. of Probe sets

Total no. of Genes

 

HG-U95Av2

199,084

15,269

2,304

2,249

7.67

HG-U133A

247,965

7,735

1,853

1,842

3.12

MG-430A2

249,958

7,237

1,538

1,351

2.9

Rat-230A

175,477

1,999

559

543

1.14

  1. Probe level statistics based on AffyMAPSDetector log results for probes that do not actually represent the gene that they were designed to represent (un-mapped probes).