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Table 2 Output results from AffyMAPSDetector run on HG-U95Av2.

From: AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs

 

dbSNP -build-123

dbSNP-build-126

Number of probes that contain documented SNPs

7,286 probes from 2,582 probesets (or 2,479 unique genes)

8,758 probes from 3,002 probesets (or 2,858 unique genes)

Number of SNP containing probes involving 13th position

325 probes

409 probes

Number of SNP containing probes NOT involving 13thposition

6,961 probes

8,349 probes

Number of SNP containing probes involving 13th position only

251 probes

332 probes

Number of SNP containing probes involving 13th position and atleast one more position

74 probes

77 probes

Number of probesets (or unique genes) without documented SNPs

8,474 probesets (or 7,662 unique genes)

9,450 probesets (or 8,533 unique genes)

Number of probes NOT mapped into their respective reference mRNA sequence

15,269 probes belonging to 2,304 probesets (or 2,249 unique genes)

16,753 probes belonging to 2,168 probesets (or 2,017 unique genes)

  1. Comparison of the output results from AffyMAPSDetector run on HG-U95Av2 against dbSNP-build-123 and dbSNP-build-126.