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Table 3 Percentage of CAG-rich 3'-UTRs in vertebrate genes.

From: 3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions

CAG 5–7 mer

Zebrafish (7965)

Frog (8406)

Mouse (16,594)

Human (20,924)

P < 10 -7

70

0

95

0

219

0

392

1

 

0.9%

1.1%

1.3%

1.9%

P < 10 -6

136

0

163

2

470

3

749

2

 

1.7%

1.9%

2.8%

3.6%

P < 10 -5

265

8

375

15

1149

23

1520

22

 

3.3%

4.5%

6.9%

7.3%

P < 10 -4

693

43

949

95

2769

239

3215

236

 

8.7%

11.3%

16.7%

15.4%

  1. Numbers in parentheses to the right of each species indicate the total number of genes analyzed. Numbers above percentages indicate the numbe of real (left) and random (right) 3' UTRs that contain at least one cluster of CAG motifs with the indicated P-value.
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BMC Bioinformatics

ISSN: 1471-2105

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