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Table 1 DNA Oligonucleotides used for PCR amplification and cloning of 3' UTRs with restriction sites in bold text.

From: 3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions

Gene Designation

Organism

Accession #

5' Primer

3' Primer

PCR Product Size

Syntaxin 1a

Rat

NM_053788

CTGCTGGTGTAAGCTT AGCACCCAGTACCCCTCTTT

ACCTTTGGTGGAATTC TAAAGGGAAGTGGCCATGAG

598

Sec61α

Rat

NM_199256

CCAGAACTGCAAGCTT AGGGTGCTCTTACTGCTGGA

GAAGACAGAGGAATTC ACCACAGGACCTCCCTTTCT

496

Syntaxin 1B2

Rat

NM_012700

TGGATCCCCCAAGCTT TTGCCGCACATAGATAGCAG

TTTGTTCTACGAATTC AAAGATGTGTGGCATGGTCA

468

Syntaxin 1B2

Human

BC062298

TCCAGAGGCCGAATTC ACCCTTCTCTCTCCCAGACC

TAAGCCACCCAAGCTT CAGTGGCTTTGTTGCTGTTG

573

Syntaxin 5

Rat

NM_031704

CCATGGAGGGAAGCTT ACCCTTCTGGAAGGACAGGT

CCCCCCACCTGAATTC GTGAGGAGAAGGTGGCAGTC

404

Tubα3

Rat

CH473964

GGGCTGCAGGAAGCTT GCTTCCTCATCTTCCACAGC

TTTGTGGATTTCTAGA CTGGATGGTACGCTTGGTTT

626

CamKIIα

Rat

NW_047514

AGCAAGCCCGTGAATTC GCACACCACCATCCTGAAC

GCGCCCTCCGGTCGAC CCCAGATCTGTGGAAGTGGA

184

Tubβ4

Rat

82522352

GAGCAATATGGAATTC AACGACCTGGTGTCCGAGTA

TGAGTCATTGCGTCGAC TTTATTGATGGAGGGTCTGC

750

Tubβ4

Human

BC013683

AGGCTGCTCCGAATTC CATCGCTTCCCACCTGTC

ACAAGGCCTGAAGCTT TTCTCTCCCAGATAAGCTAAGGTC

710