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Table 3 PA flagged probesets with > 8 fold differential expression according to MAS5 and less than 2 fold according to RMA.

From: The utility of MAS5 expression summary and detection call algorithms

Probeset ID

f.c.

ttest

mcf7

mcf10a

gene name

1553494_at

5.03 ± 0.59

0.00

4.05

-0.97

TDH

210833_at

4.69 ± 0.53

0.00

4.37

-0.32

PTGER3

1564699_at

4.56 ± 0.67

0.01

4.10

-0.46

C5orf4

222136_x_at

4.04 ± 0.54

0.00

7.62

3.58

ZNF43

1558687_a_at

3.86 ± 0.67

0.00

4.23

0.38

NA

228811_at

3.84 ± 0.56

0.00

4.33

0.48

PLA2G5

214761_at

3.59 ± 0.56

0.00

4.63

1.04

ZNF423

207886_s_at

3.58 ± 0.25

0.02

4.74

1.17

CALCR

217681_at

3.40 ± 1.28

0.00

5.66

2.26

WNT7B

210100_s_at

3.38 ± 0.98

0.00

6.48

3.11

ABCA2

205501_at

3.34 ± 1.23

0.04

3.58

0.25

NA

243580_at

3.29 ± 0.75

0.01

4.61

1.32

GNA14

214191_at

3.26 ± 0.68

0.00

5.07

1.81

ICA1

243650_at

3.20 ± 1.51

0.03

4.96

1.76

PLEKHH2

231795_at

3.19 ± 1.08

0.00

4.48

1.29

NA

230917_at

3.16 ± 1.19

0.03

4.34

1.18

NA

228090_at

3.13 ± 0.52

0.01

5.86

2.73

NMNAT3

216061_x_at

3.13 ± 0.63

0.00

6.35

3.22

PDGFB

243804_at

3.12 ± 0.57

0.01

4.12

1.00

FLJ32642

204778_x_at

3.09 ± 1.25

0.01

6.09

3.00

HOXB7

241744_x_at

3.08 ± 0.52

0.04

3.63

0.54

NA

226086_at

3.05 ± 0.49

0.00

4.18

1.13

SYT13

1569701_at

3.03 ± 0.47

0.04

3.91

0.89

PER3

225163_at

3.01 ± 0.72

0.01

5.05

2.03

FRMD4A

204885_s_at

-3.22 ± 0.40

0.01

2.70

5.92

MSLN

214587_at

-3.27 ± 0.28

0.03

0.64

3.92

COL8A1

233792_at

-3.31 ± 0.61

0.00

0.51

3.82

NA

205964_at

-3.44 ± 0.45

0.02

1.22

4.66

ZNF426

219983_at

-3.47 ± 0.27

0.00

0.73

4.20

HRASLS

239955_at

-3.47 ± 0.84

0.00

0.48

3.95

NA

1563693_at

-3.50 ± 0.30

0.00

0.13

3.63

NA

1553574_at

-3.59 ± 1.10

0.00

-0.20

3.39

IFNE1

219058_x_at

-3.70 ± 1.22

0.01

2.46

6.16

LCN7

228821_at

-3.75 ± 0.43

0.01

-0.17

3.58

ST6GAL2

1564796_at

-3.87 ± 0.28

0.01

0.80

4.68

EMP1

225372_at

-4.07 ± 0.39

0.00

0.74

4.82

C10orf54

1556773_at

-4.14 ± 1.39

0.00

0.10

4.24

PTHLH

1562648_at

-4.17 ± 0.84

0.00

0.10

4.28

KIAA1212

1558512_at

-4.29 ± 1.38

0.00

-0.32

3.97

NA

1553654_at

-4.45 ± 0.70

0.00

-0.97

3.48

SYT14

  1. f.c.: log2 fold change, ± standard error. t-test: t-test p-score between replicates. MCF7, MCF10a: log2 mean expression level. Probesets marked in bold type were validated by real time PCR.