From: The utility of MAS5 expression summary and detection call algorithms
 | rma | Gcrma | mas5 | filtered mas5 |
---|---|---|---|---|
Median SD | 0.07 | 0.06 | 0.29 | 0.08 |
null log-fc IQR | 0.13 | 0.04 | 0.47 | 0.01 |
null log-fc 99.9% | 0.40 | 0.61 | 4.01 | 1.25 |
Signal detect R2 | 0.90 | 0.91 | 0.91 | 0.88 |
Signal detect slope | 0.68 | 1.00 | 0.77 | 0.77 |
low.slope | 0.20 | 0.25 | 0.58 | 0.25 |
med.slope | 0.71 | 1.13 | 0.73 | 0.79 |
high.slope | 0.80 | 0.97 | 0.77 | 0.77 |
Obs-intended-fc slope | 0.68 | 1.00 | 0.77 | 0.77 |
Obs-(low)int-fc slope | 0.31 | 0.48 | 0.64 | 0.44 |
low AUC | 0.43 | 0.35 | 0.00 | 0.19 |
med AUC | 0.85 | 0.86 | 0.00 | 0.18 |
high AUC | 0.93 | 0.86 | 0.00 | 0.18 |
weighted avg AUC | 0.53 | 0.48 | 0.00 | 0.19 |
AFP, call if fc > 2 | 1.71 | 3.30 | 2863.36 | 73.73 |
ATP, call if fc > 2 | 32.91 | 35.40 | 35.45 | 34.18 |
FC = 2, AFP, call if fc > 2 | 0.24 | 1.95 | 2785.10 | 63.52 |
FC = 2, ATP, call if fc > 2 | 10.81 | 19.57 | 14.33 | 12.86 |