Table 1 Fold recognition: performance of the optimized energy functions on the Optimization and Test sets
From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets
Number of amino acid groups | Optimization Set | Test Set | ||
|---|---|---|---|---|
(%) | D (%) | (%) | D(%) | |
2 | 74.3 | 69.8 | 74.4 | 70.0 |
3 | 76.4 | 72.2 | 75.3 | 72.0 |
4 | 87.5 | 84.4 | 87.4 | 84.6 |
6 | 88.3 | 86.7 | 91.9 | 89.4 |
20 | 94.4 | 91.9 | 91.3 | 88.4 |