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Figure 4 | BMC Bioinformatics

Figure 4

From: Progressive multiple sequence alignments from triplets

Figure 4

Comparison of alignments scores of aln3nn with progressive pairwise alignments for simulated data sets for different in/del rates. Data are averages over 100 simulated sets of 3 and 10 related nucleotide sequences, resp., with an average length of 100 nt. The sequences in each set are derived using ROSE from a randomly generated root sequence following the order of a given phylogenetic tree with randomly chosen branch lengths using a constant mean substitution frequency of 0.13 across the dataset. The following scoring model was used: Match score 1.9, mismatch 0.0 (as in the IUB DNA scoring matrix), gap open 2.0, gap extensions 0.5).

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