Table 2 List of training datasets and profiles for the four classification methods
From: HoxPred: automated classification of Hox proteins using combinations of generalised profiles
classification method | training dataset composition | variables | |
|---|---|---|---|
Hox sequences | CTL sequences | ||
all-groups | |||
(PG) | HOX | RANDOM + HOMEO | all 14 PG profiles |
(OG) | HOX | RANDOM | all 40 0G profiles |
2-groups | HOX | RANDOM | all 40 0G profiles |
(2 classes: thisOG or notThisOG) | |||
anterior/posterior | |||
anterior | HOX:PG1–8 only | RANDOM | OG profiles of PG1–8 |
posterior | HOX:PG9–13 only | RANDOM | OG profiles of PG9–13 |
PG-groups | HOX: OG of a single PG | RANDOM | OG profiles of a single PG |