From: Improving gene set analysis of microarray data by SAM-GS
Dataset | % of individual genes with FDR* ≤ 0.25 | # of gene sets with FDR ≤ 0.01 | # of gene sets with FDR ≤ 0.25 | Sensitivity/Specificity (AUC†) of GSEA‡ | ||
---|---|---|---|---|---|---|
 |  | GSEA | SAM-GS | GSEA | SAM-GS |  |
Sex | 0.1% | 4 | 5 | 6 | 6 | 0.78/0.98 (0.94) |
p53 | 0.3% | 3 | 36 | 6 | 308 | 0.21/0.94 (0.68) |
Leukemia | 79.9% | 0 | 182 | 5 | 182 | 0.06/NA§ (NA§) |