Figure 4

StatiGen output example showing a significantly overrepresented pattern. 1. The pattern summary box gives details regarding the pattern's significance, rank among significant patterns, and # genes in pattern. 2. Below the pattern summary box, there is a drop down menu allowing users to rapidly switch their view to other significant patterns. 3. The export button allows users to export their list to another Excel worksheet for further analysis. 4. A graph of the average (± SEM- standard error of the mean) of the standardized expression values from all genes in the pattern (Y axis) across the treatment groups in the study (X axis) is displayed. 5. The list of this pattern's member genes is presented. The first column is probe set ID, and the last column is hyperlinked to the National Cancer Institute's database of Affymetrix probe set IDs. The intermediate columns are provided by the user at the 'annotation information' stage of the algorithm (see Fig. 1).