Skip to main content

Table 3 Prediction results at 5% level using the conservative bound.

From: AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions

Nearest HSS
Virus Ori Center Start Peak Value Prediction
bohv1 111190 109702 109730 25 Yes
bohv1 127028 128487 128515 25 Yes
bohv4 97996.5 60687 60826 35 No
bohv5 113312 113549 113583 28 Yes
bohv5 129701 129429 129463 28 Yes
cehv1 61690.5 61680 61700 20 Yes
cehv1 61893.5 61680 61700 20 Yes
cehv1 132795.5 132785 132805 20 Yes
cehv1 132998.5 132785 132805 20 Yes
cehv1 149425.5 149415 149435 20 Yes
cehv1 149628.5 149415 149435 20 Yes
cehv16 62981 62970 62991 21 Yes
cehv16 133479 133468 133489 21 Yes
cehv16 149824 149813 149834 21 Yes
cehv2 61493.5 61483 61503 20 Yes
cehv2 129537.5 129527 129547 20 Yes
cehv2 144471.5 144461 144481 20 Yes
cehv7 109636.5 86167 86296 37 No
cehv7 118622.5 86167 86296 37 No
ebv 8313.5 11854 11950 45 No
ebv 40797 43158 43235 23 Yes
ebv 143825.5 77111 77150 24 No
ehv1 126262.5 128924 128992 23 Yes
ehv4 73909.5 73340 73509 37 Yes
ehv4 119471.5 112929 112967 29 No
ehv4 138577.5 132383 132462 49 No
gahv1 24871.5 24852 24890 30 Yes
hcmv 93923.5 96685 96824 34 Yes
hhv6 67805 130410 130501 59 No
hhv6b 69160.5 132997 133163 62 No
hhv7 66991.5 128589 128984 70 No
hsv1 62475 62465 62485 20 Yes
hsv1 131999 131990 132008 18 Yes
hsv1 146235 144115 144142 18 Yes
hsv2 62930 62919 62939 17 Yes
hsv2 132760 132691 132711 17 Yes
hsv2 148981 146600 146631 19 Yes
rcmv 77318 24072 24108 21 No
shv1 63878 63862 63892 24 Yes
shv1 114701 114686 114715 20 Yes
shv1 129901 129607 129636 20 Yes
vzv 110218.5 110195 110227 32 Yes
vzv 119678.5 119669 119701 32 Yes
  1. For each replication origin, we list the high-scoring segment (at 5% level) closest to it. When the peak of a high-scoring segment is less than 2 map units away from the center of a replication origin, we say that our method has correctly predicted that particular replication origin.