Skip to main content

Table 2 False negative (FN) vs. false positive (FP) rates on test and intergenic data sets for acceptor sites

From: A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana

FN(%)

FP(%)

 

GS-test

GS-intg

GSESE-test

GSESE-intg

0.5

14.27

29.58

12.47

20.67

1

10.03

23.39

8.09

15.74

2

7.11

18.51

5.80

11.30

3

5.64

15.76

4.21

9.00

5

4.00

12.41

2.94

6.56

7

3.13

10.43

2.18

5.20

10

2.32

8.41

1.62

4.01

15

1.55

6.20

1.05

2.74

20

1.10

4.86

0.71

2.01

  1. Rates on test data are obtained from a 5-fold CV procedure on the ESEAra data set, while FP rates on intergenic data are averages of the FP rates obtained on INTAra by setting a threshold that would produce the same FN rate on each of the 5 fold test data.