Table 1 BLAST results for the highest up and down-regulated genes by fold change
From: Analysis of probe level patterns in Affymetrix microarray data
| Â | Â | Â | Hsbp1 | Â | Highest Up-regulated Gene | Â | Â | Â | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Log 2 Array Mean centered | Â | Perf. Seq. | Probe | Sequence | ||||
| Â | Probe | Probe | Probe Intensity by Array | Â | w. target | Overlap | Homology | ||||
Probe sequence | Name | Position | A | B | C | D | Affin. | gene | Â | Perf. | Part. |
GGCAACTCAGCAGCGGTGTCTCAGA | 1 | 309–333 | -0.867 | -0.771 | -0.952 | -0.860 | 0.953 | 0 | 5 | 1 | 33 |
TCAGAGATCCGACAGACGGCCGATC | 2 | 329–353 | -1.560 | -1.322 | -0.890 | -0.646 | 0.123 | 1 | 0 | 1 | 2 |
GAGGAGCTCACAGTTAAGACCAAGG | 3 | 392–416 | -1.583 | -1.287 | -0.933 | -0.991 | -0.781 | 0 | 0 | 1 | 28 |
GATGAACATGGCTACATCTCTCGGT | 4 | 458–482 | 0.862 | 0.429 | 4.728 | 4.665 | 0.198 | 1 | 0 | 3 | 28 |
AAGCAGTCACACAATCAGCGGAGAT | 5 | 585–609 | -1.310 | -1.430 | -1.198 | -0.879 | -0.500 | 1 | 6 | 3 | 10 |
GGAGATCACCATTCCGGTCACTTTC | 6 | 604–628 | 0.105 | 0.119 | 3.522 | 3.191 | 1.606 | 1 | 3 | 3 | 6 |
TTCGAGGCCCGTGCCCAAATTGGAG | 7 | 626–650 | 2.880 | 2.293 | 3.521 | 2.828 | 2.127 | 1 | 5 | 3 | 5 |
TGGAGGCCCAGAGTCGGAACAGTCT | 8 | 646–670 | -0.974 | -0.827 | -0.993 | -0.841 | 0.412 | 1 | 4 | 3 | 16 |
GTCTGGAGCCAAGTAGAAGCCTTCA | 9 | 667–691 | -0.215 | -0.384 | 3.274 | 3.027 | -0.843 | 1 | 12 | 3 | 33 |
TAGAAGCCTTCAGCTTGCTACCCAT | 10 | 680–704 | 0.970 | 0.812 | 0.711 | 0.546 | 1.685 | 1 | 0 | 3 | 21 |
TCCCTCTCTGTCAATCTGATATGCT | 11 | 727–745 | 0.303 | 0.069 | 2.940 | 2.345 | 1.162 | 0 | NA | 0 | 19 |
| Â | Â | Â | Id2 | Â | Highest Down-regulated Gene | Â | Â | Â | |||
TGGACGACCCGATGAGTCTGCTCTA | 1 | 144–168 | 1.507 | 0.623 | 0.342 | 0.258 | 1.1012 | 1 | 1 | 4 | 3 |
ACAACATGAACGACTGCTACTCCAA | 2 | 168–192 | 1.861 | 1.423 | 0.630 | 0.399 | -0.082 | 1 | 10 | 4 | 9 |
GCTACTCCAAGCTCAAGGAACTGGT | 3 | 183–207 | 0.437 | 0.156 | -0.616 | -0.511 | -0.124 | 1 | 0 | 4 | 45 |
ATCCTGCAGCACGTCATCGATTATA | 4 | 248–272 | 2.003 | 1.848 | 0.710 | 0.615 | 1.358 | 1 | 5 | 4 | 17 |
TTATATCTTGGACCTGCAGATCGCC | 5 | 268–292 | 0.688 | 0.442 | -0.215 | -0.221 | 0.6038 | 1 | 0 | 4 | 37 |
TGAACACGGACATCAGCATCCTGTC | 6 | 375–399 | 0.806 | 0.775 | -0.041 | -0.034 | 0.3126 | 1 | 8 | 4 | 32 |
ATCCTGTCCTTGCAGGCGTCTGAAT | 7 | 392–416 | 0.741 | 0.822 | 0.310 | 0.826 | 2.1972 | 1 | 4 | 3 | 15 |
GAATTCCCTTCTGAGCTTATGTCGA | 8 | 413–437 | 2.422 | 2.189 | 1.162 | 0.656 | 1.4553 | 1 | 0 | 3 | 41 |
TTCTCTTTTTCTTTTGCACAACAAG | 9 | 518–542 | 0.375 | -0.217 | -0.369 | -0.691 | 1.1409 | 1 | 0 | 3 | 97 |
TGTTATCAACCATTTCACCAGGAGA | 10 | 587–608 | 0.434 | 0.713 | -0.350 | -0.557 | 0.0674 | 1 | 0 | 3 | 40 |
GGCCTGGACTGTGATAACCGTTATT | 11 | 683–707 | 2.214 | 1.663 | 1.130 | 0.615 | -0.061 | 1 | NA | 3 | 19 |