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Table 3 Comparison of number of haplotypes (|H|) on a general pedigree

From: Estimate haplotype frequencies in pedigrees

Parameter settings (m, k)

directly

HANAP

 

P 1

P 2

P3

P 4

P 1

P 2

P 3

P 4

(20, 20)

2.31e5

1.07e3

3.65e6

1.65e6

20.78

18.34

20.15

20.05

(20, 50)

2.53e5

2.38e3

6.82e6

2.24e6

21.0

19.39

21.2

20.67

(20, 100)

2.96e5

4.51e3

1.08e7

3.38e6

20.9

19.5

20.75

20.8

(200, 20)

N/A

N/A

N/A

N/A

26.8

21.3

22.1

22.4

(200, 50)

N/A

N/A

N/A

N/A

34.4

22.1

23.5

24.2

(200, 100)

N/A

N/A

N/A

N/A

54.7

23.9

28.9

32.8

(500, 20)

N/A

N/A

N/A

N/A

1.41e2

22.4

23.2

23.9

(500, 50)

N/A

N/A

N/A

N/A

2.24e2

29.5

35.7

30.7

(500, 100)

N/A

N/A

N/A

N/A

4.06e2

30.1

41.4

42.5

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BMC Bioinformatics

ISSN: 1471-2105

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