Sequences | Length of CS (averaged over 10 instances) | ||||||||
---|---|---|---|---|---|---|---|---|---|
 | k | n | LB | ALPHA | Ratio | MM | Ratio | DR | Ratio |
DNA sequences | |||||||||
DNA-1 | 100 | 500 | 686.6 | 2,000 | 2.91 | 1359.7 (18.7) | 1.98 | 1346.4 (19.6) | 1.96 |
DNA-2 | 500 | 500 | 689.5 | 2,000 | 2.90 | 1430.5 (22.1) | 2.07 | 1420.7 (18.1) | 2.06 |
DNA-3 | 100 | 1000 | 1361.0 | 4,000 | 2.94 | 2698.0 (39.9) | 1.98 | 2675.7 (37.2) | 1.97 |
DNA-4 | 500 | 1000 | 1364.4 | 4,000 | 2.93 | 2822.3 (43.4) | 2.07 | 2769.1 (32.7) | 2.03 |
Protein sequences | |||||||||
PROT-1 | 100 | 500 | 800.6 | 10,000 | 12.49 | 5312.7 (81.9) | 6.64 | 4846.3 (73.9) | 6.05 |
PROT-2 | 500 | 500 | 803.5 | 10,000 | 12.45 | 5935.6 (61.8) | 7.39 | 5548.6 (54.3) | 6.91 |
PROT-3 | 1000 | 500 | 809.8 | 10,000 | 12.35 | 6082.4 (44.9) | 7.51 | 5734.0 (43.9) | 7.08 |