Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

BMC Bioinformatics

Table 2 Accuracy results on chromosome 22

	chr22	base		exon		gene
		sn	sp	sn	sp	sn	sp
	AUGUSTUS	0.85	0.59	0.71	0.52	0.19	0.09
	GENSCAN	0.89	0.49	0.73	0.39	0.10	0.05
AUGUSTUS+	EST	0.90	0.63	0.80	0.58	0.25	0.12
	Protein	0.94	0.65	0.87	0.63	0.37	0.19
	Combined	0.91	0.65	0.81	0.61	0.30	0.15
	all hints	0.94	0.68	0.89	0.66	0.41	0.22
	TWINSCAN	0.85	0.65	0.76	0.58	0.14	0.10
	SGP2	0.87	0.66	0.74	0.56	0.19	0.10

Accuracy results on human chromosome 22 using the annotation of the Sanger Center as a standard of truth. The results were computed using the program Eval from Evan Keibler and Michael R. Brent. The TWINSCAN and the SGP2 predictions were taken from [28] and [29]. The AUGUSTUS predictions can be downloaded from the AUGUSTUS web server [27]

ISSN: 1471-2105