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Table 6 Results obtained with and without the use of the six GO terms related to subnuclear compartments.

From: Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction

GO Module with BLAST homologs With the subnuclear compartment GO terms without the subnuclear compartment GO terms
Compartment MCC (Accuracy %)
PML BODY 0.291 (40.0) 0.290 (40.0)
Nuclear Lamina 0.626 (67.4) 0.609 (65.1)
Nuclear Splicing Speckles 0.657 (70.0) 0.640 (73.7)
Chromatin 0.544 (63.5) 0.543 (61.5)
Nucleoplasm 0.543 (58.5) 0.548 (60.0)
Nucleolus 0.744 (82.5) 0.723 (80.1)
Overall for Single-localization 0.568 (70.1) 0.559 (69.2)
Number of proteins predicted by the GO module 401 out of 504 399 out of 504