From: Evaluation of clustering algorithms for protein-protein interaction networks
Counts | |||||||
---|---|---|---|---|---|---|---|
T | cluster 1 | cluster 2 | cluster 3 | cluster 4 | cluster 5 | sum | complex size |
complex 1 | 7 | 0 | 0 | 0 | 0 | 7 | 7 |
complex 2 | 0 | 6 | 8 | 0 | 0 | 14 | 14 |
complex 3 | 0 | 0 | 0 | 14 | 3 | 17 | 20 |
complex 4 | 0 | 0 | 0 | 4 | 5 | 9 | 8 |
sum | 7 | 6 | 8 | 18 | 8 | 47 | Â |
cluster size | 7 | 6 | 8 | 16 | 8 | Â | Â |
Positive Predictive Value (PPV) | |||||||
PPV | cluster 1 | cluster 2 | cluster 3 | cluster 4 | cluster 5 | Â | Â |
complex 1 | 1 | 0 | 0 | 0 | 0 | Â | Â |
complex 2 | 0 | 1 | 1 | 0 | 0 | Â | Â |
complex 3 | 0 | 0 | 0 | 0.78 | 0.38 | Â | Â |
complex 4 | 0 | 0 | 0 | 0.22 | 0.62 | Â | Â |
cluster-wise PPV | 1 | 1 | 1 | 0.78 | 0.62 | Â | Â |
Sensitivity | |||||||
Sn | cluster 1 | cluster 2 | cluster 3 | cluster 4 | cluster 5 | complex-wise Sn | Â |
complex 1 | 1 | 0 | 0 | 0 | 0 | 1 | Â |
complex 2 | 0 | 0.43 | 0.57 | 0 | 0 | 0.57 | Â |
complex 3 | 0 | 0 | 0 | 0.70 | 0.15 | 0.70 | Â |
complex 4 | 0 | 0 | 0 | 0.50 | 0.62 | 0.62 | Â |
Frequency per row | |||||||
F row | cluster 1 | cluster 2 | cluster 3 | cluster 4 | cluster 5 | Â | Â |
complex 1 | 1 | 0 | 0 | 0 | 0 | Â | Â |
complex 2 | 0 | 0.43 | 0.57 | 0 | 0 | Â | Â |
complex 3 | 0 | 0 | 0 | 0.82 | 0.18 | Â | Â |
complex 4 | 0 | 0 | 0 | 0.44 | 0.56 | Â | Â |
Separation | |||||||
C | cluster 1 | cluster 2 | cluster 3 | cluster 4 | cluster 5 | complex-wise separation | Â |
complex 1 | 1 | 0 | 0 | 0 | 0 | 1 | Â |
complex 2 | 0 | 0.43 | 0.57 | 0 | 0 | 1 | Â |
complex 3 | 0 | 0 | 0 | 0.64 | 0.07 | 0.71 | Â |
complex 4 | 0 | 0 | 0 | 0.10 | 0.35 | 0.45 | Â |
cluster-wise separation | 1 | 0.43 | 0.57 | 0.74 | 0.41 | Â | Â |