Figure 3
From: Predicting DNA-binding sites of proteins from amino acid sequence
Comparison of actual and predicted DNA-binding site residues for transcription factor CREB (PDB 1dh3A). PROSITE motif BZIP_BASIC (bottom row) covers many of the actual interface residues (the first row below sequence). Note that the predictions of Naïve Bayes classifier (the second row below sequence) overlap with the PROSITE motifs, but more closely correspond to the actual interface residues.