From: Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling
Gene Name | Peak phase | Time Delayed | ||||
---|---|---|---|---|---|---|
 |  | One-unit time | One-unit time | Three-unit time | Four-unit time | Five-unit time |
PCNA | G1/S | Â | +E2F1(t-1)+CCNA2(t-1)-CDC20(t-1) => +PCNA(t+1) | Â | Â | Â |
NPAT | G1/S | Â | Â | Â | -CDC2( t -1) => +NPAT( t +1) | Â |
E2F1 | G1/S | +BUB1B(t) => -E2F1(t+1) | Â | Â | +BUB1B(t) => -E2F1(t+1) | Â |
CCNE1 | G1/S | +CDC2( t )-CDC25B( t ) => +CCNE1( t +1) | +CDC2( t -1)+CDC20( t -1) => +CCNE1( t +1) | +CDC2( t -1)+CDC20( t -1) => +CCNE1( t +1) | +CDC2(t-1)+CDC20(t-1) => +CCNE1(t+1) | -CCNF(t)-CDC20(t-4) => -CCNE1(t+1) |
CDC25A | G1/S | -CCNE1(t)-CCNE1(t) +CDC20(t) => -CDC25A(t+1) | Â | Â | -CCNE1(t)-BUB1B(t-1) => +CDC25A(t+1) | -CCNE1(t)-STK15(t) => +CDC25A(t+1) |
CDKN1A | G1/S | -CDKN1A(t)-DHFR(t) => +CDKN1A(t+1) | -CDKN1A(t)-DHFR(t-1) => +CDKN1A(t+1) | -CDKN1A(t)-BRCA1(t-2) => +CDKN1A(t+1) | -CDKN1A(t)+CDC20(t-3) => +CDKN1A(t+1) | -CDKN1A(t)+CDC20(t-3) => +CDKN1A(t+1) |
BRCA1 | S | Â | Â | Â | Â | Â |
DHFR | S | Â | +BUB1B( t -1)+CDC25A( t -1) => +DHFR( t +1) | Â | Â | Â |
TYMS | S | Â | Â | Â | Â | Â |
CCNF | G2 | +CDC2( t ) -BUB1B( t ) => -CCNF( t +1) | +CDC2(t)-STK15(t-1) => -CCNF(t+1) | -CDC2(t)+CDC25C(t) => +CCNF(t+1) | +CDC2( t ) => +CCNF( t +1) | +CDC2( t ) => +CCNF( t +1) |
CCNA2 | G2 | -CDC2(t)+STK15(t) => +CCNA2(t+1) | +CDC2(t)-STK15(t-1) => -CCNA2(t+1) | Â | +CDC2(t) => +CCNA2(t+1) | +CDC2( t ) => +CCNA2( t +1) |
CDC20 | G2/M | -STK15(t)-CKS2(t) => -CDC20(t+1) | -STK15( t )+CDC20( t -1) => +CDC20( t +1) | -STK15( t )+CDC20( t -2) => +CDC20( t +1) | -CKS2(t)-CDC20(t-3) => +CDC20(t+1) | +CCNE1(t)+TYMS(t) => +CDC20(t+1) |
STK15 | G2/M | -CCNF( t )-CCNE1( t ) => +STK15( t +1) | -CCNF( t )-CCNE1( t ) => +STK15( t +1) | +CDC2( t -1)+CDC20( t -1) => -STK15( t +1) | -CDC2( t -1) => -STK15( t +1) | -CCNF( t ) => -STK15( t +1) |
BUB1B | G2/M | Â | Â | +CDC2(t-1)+CDC20(t-1) => -BUB1B(t+1) | +CDC2(t-1)+CDC20(t-1) => -BUB1B(t+1) | +CDC2(t-1)+CDC20(t-1) => -BUB1B(t+1) |
CKS2 | G2/M | -CCNF( t )-PCNA( t ) => +CKS2( t +1) | +CCNA2( t -1)-BRCA1( t -1) => -CKS2( t +1) | +CCNA2( t -1)-BRCA1( t -1) => -CKS2( t +1) | +CCNA2( t -1)+CKS2( t -3) => -CKS2( t +1) | -STK15(t) => -CKS2(t+1) |
CDC25C | G2/M | Â | +CDC2(t)+TYMS(t)-CDKN1A(t-1) => +CDC25C(t+1) | +CDC2(t)+TYMS(t)-CDKN1A(t-1) => +CDC25C(t+1) | +CDC2( t )+TYMS( t )+PCNA( t -3) => +CDC25C( t +1) | +CDC2( t )+CDC25A( t -4)-CDC20( t -3) => +CDC25C( t +1) |
PLK | G2/M | -STK15( t )-CCNF( t ) => -PLK( t +1) | -STK15( t )-CCNF( t ) => -PLK( t +1) | -STK15( t )-CCNF( t ) => -PLK( t +1) | -STK15( t )-CCNF( t ) => -PLK( t +1) | -STK15( t )-CKS2( t -4) => +PLK( t +1) |
CCNB1 | G2/M | Â | Â | Â | Â | Â |
CDC25B | G2/M | -CKS2(t)-CDKN1A(t)-BUB1B(t) => -CDC25B(t+1) | -CKS2(t)+PCNA(t-1) => +CDC25B(t+1) | Â | -CKS2( t )-CDC20( t -2) => +CDC25B( t +1) | -CKS2(t)-CDC20(t-4) => +CDC25B(t+1) |
CDC2 | G2/M | -CDC2(t) => -CDC2(t+1) | Â | Â | Â | -E2F1(t-4) => -CDC2(t+1) |