Table 1 Comparative analysis of sequence trimming by Lucy and MAGIC-SPP. Both Lucy and MAGIC-SPP were used with their default parameters. The adapter for this cDNA library had a length of 11 nucleotides. All sequences are 5' ESTs.
From: MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools
Lucy | MAGIC-SPP | |
|---|---|---|
Input sequences | 17952 | 17952 |
Passing sequence reads | 14490 | 15596 |
Sequence reads with at least one adapter remaining | 2399 | 681 |
Average trimmed length in nucleotides | 574 | 570 |
Total base calls in trimmed reads | 8317260 | 8889720 |