From: Exploring the boundaries: gene and protein identification in biomedical text
False Positives | Classifier (CL) | Gold Standard (GS) |
---|---|---|
General Words | homolog gene | - |
Measures | kat/L | - |
Possible Errors in GS | [ssDNA-] and [RNA-binding protein] | ssDNA- and [RNA-binding protein] |
False Negatives | Classifier (CL) | Gold Standard (GS) |
Coordination | [YAP2 uORF1] and uORF2 | [YAP2 uORF1] and [uORF2] |
Missing Expansion | zinc-finger protein ([THZif-1]) | [zinc-finger protein] ([THZif-1]) |
Boundary Errors | Classifier (CL) | Gold Standard (GS) |
GS NE contains CL NE(s) | AP-1 complexes | high mobility AP-1 complexes |
 | USH1C | USH1C disease gene |
 | partner of [Rac] | [partner of Rac] |
CL NE contains GS NE(s) | regulator virF | virF |
 | Wnt pathway | Wnt |
CL and GS Overlap | Serum [Fibrin Degradation Products] | [Serum Fibrin] Degradation Products |