Figure 3From: Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMERAnalysis of transition prior probabilities. (A) Local/local mode. (B) Global/local mode. SAM and HMMER models were built using their own default transition prior, and with default transition prior from the other program. The transition priors seem to be specific to their programs as they degrade the performance of the other program.Back to article page