Figure 2From: Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMERAnalysis of emission prior probabilities. HMMER models were estimated using the SAM emission prior recode3.20.comp. Both local/local and global/local models were improved compared to using the HMMER default emission prior. Part of the SAM – HMMER performance difference can therefore be assigned to the emission prior.Back to article page