Figure 1
From: Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Model building and database searching performance of SAM and HMMER. (A) Local/local mode. (B) Global/local mode. The Viterbi algorithm was used for all searches. Otherwise, default settings were used. The model building program is mentioned first in the legend, and the scoring program second. 'SAM-SAM' means 'Building the HMM using SAM; Searching using SAM', 'HMMER-SAM' means 'Building the HMMs using HMMER; Searching using SAM', etc.