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Table 6 The average Robinson and Foulds distance of 100 data sets of 5000 taxa for each tree diameter 0.1, 0.5, 1.0 and 1.5 and with sequence length 1000 nt (large simulation). Methods are used with BNNI.

From: Shortest triplet clustering: reconstructing large phylogenies using representative sets

number sequences

NJ

BIONJ

HGT/FP

GME

BME

STCk = 5

5000 (0.1)

.168

.168

.168

.168

.168

.168

5000 (0.5)

.066

.066

.066

.066

.066

.066

5000 (1.0)

.057

.057

.057

.057

.057

.057

5000 (1.5)

.055

.055

.055

.055

.055

.055