Table 5 The average Robinson and Foulds distance of 100 simulated data sets of 1000 taxa for each tree diameter 0.1, 0.5, 1.0 and 1.5 and with sequence length 1000 nt (large simulation). Methods are used with BNNI.
From: Shortest triplet clustering: reconstructing large phylogenies using representative sets
number sequences | NJ | BIONJ | HGT/FP | GME | BME | STCk = 5 |
|---|---|---|---|---|---|---|
1000 (0.1) | .137 | .137 | .137 | .137 | .137 | .138 |
1000 (0.5) | .061 | .061 | .061 | .061 | .061 | .061 |
1000 (1.0) | .057 | .057 | .057 | .057 | .057 | .056 |
1000 (1.5) | .055 | .055 | .055 | .055 | .055 | .055 |