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Figure 4 | BMC Bioinformatics

Figure 4

From: A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles

Figure 4

Importance of torsion angle restraints exemplified on HPr from Streptococcus faecalis. On the left hand side the model structure calculated with PERMOL using 427 torsion angle restraints and 41 hydrogen bonds is displayed, while on the right hand side the target X-ray structure 1PTF is shown. The RMSD value for the heavy atoms of the two structures is 0.328 nm. Restraints for torsion angles and hydrogen bonds were directly generated from the X-ray structure 1PTF.

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BMC Bioinformatics

ISSN: 1471-2105

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