From: A method for aligning RNA secondary structures and its application to RNA motif detection
RefSeq ID | Location by PatSearchc | Score of RSmatch | Location by RSmatch | Annotation |
---|---|---|---|---|
NM_002105 | 551–572 | 16 | 549–574 | Hs H2A histone family, (H2AFX) |
NM_003493 | 454–475 | 16 | 452–478 | Hs histone 3, H3 (HIST3H3) |
NM_003495 | 342–363 | 16 | 341–366 | Hs histone 1, H4i (HIST1H4I) |
NM_003509 | 445–466 | 16 | 444–469 | Hs histone 1, H2ai (HIST1H2AI) |
NM_003512 | 521–542 | 16 | 520–542 | Hs histone 1, H2ac (HIST1H2AC) |
NM_003517 | 413–434 | 16 | 412–437 | Hs histone 2, H2ac (HIST2H2AC) |
NM_003518 | 408–429 | 16 | 407–432 | Hs histone 1, H2bg (HIST1H2BG) |
NM_003519 | 429–450 | 16 | 428–450 | Hs histone 1, H2bl (HIST1H2BL) |
NM_003520 | 425–446 | 16 | 424–449 | Hs histone 1, H2bn (HIST1H2BN) |
NM_003522 | 406–427 | 16 | 405–427 | Hs histone 1, H2bf (HIST1H2BF) |
NM_003525 | 413–434 | 16 | 413–434 | Hs histone 1, H2bi (HIST1H2BI) |
NM_003526 | 414–435 | 16 | 413–435 | Hs histone 1, H2bc (HIST1H2BC) |
NM_003527 | 442–463 | 16 | 441–466 | Hs histone 1, H2bo (HIST1H2BO) |
NM_003528 | 476–497 | 16 | 475–500 | Hs histone 2, H2be (HIST2H2BE) |
NM_003530 | 443–464 | 16 | 442–467 | Hs histone 1, H3d (HIST1H3D) |
NM_003535 | 454–475 | 16 | 453–478 | Hs histone 1, H3j (HIST1H3J) |
NM_003537 | 445–466 | 16 | 444–469 | Hs histone 1, H3b (HIST1H3B) |
NM_003539 | 343–364 | 16 | 342–367 | Hs histone 1, H4d (HIST1H4D) |
NM_003546 | 340–361 | 16 | 339–364 | Hs histone 1, H4l (HIST1H4L) |
NM_005320 | 753–774 | 16 | 752–777 | Hs histone 1, H1d (HIST1H1D) |
NM_005325 | 733–754 | 16 | 732–757 | Hs histone 1, H1a (HIST1H1A) |
NM_021052 | 494–515 | 16 | 493–516 | Hs histone 1, H2ae (HIST1H2AE) |
NM_021059 | 483–504 | 16 | 483–504 | Hs histone 2, H3c (HIST2H3C) |
NM_021062 | 407–428 | 16 | 406–431 | Hs histone 1, H2bb (HIST1H2BB) |
NM_021063 | 463–484 | 16 | 462–484 | Hs histone 1, H2bd (HIST1H2BD) |
NM_021064 | 470–491 | 16 | 469–494 | Hs histone 1, H2ag (HIST1H2AG) |
NM_021066 | 414–435 | 16 | 413–435 | Hs histone 1, H2aj (HIST1H2AJ) |
NM_021968 | 331–352 | 16 | 330–355 | Hs histone 1, H4j (HIST1H4J) |
NM_170610 | 413–434 | 16 | 412–437 | Hs histone 1, H2ba (HIST1H2BA) |
NM_175055 | 428–449 | 16 | 427–450 | Hs histone 3, H2bb (HIST3H2BB) |
NM_003542 | N/Ac | 14 | 365–390 | Hs histone 1, H4c (HIST1H4C) |
NM_003548 | N/A | 14 | 371–396 | Hs histone 2, H4 (HIST2H4) |
NM_021058 | 457–478 | 14 | 455–481 | Hs histone 1, H2bj (HIST1H2BJ) |
NM_003510 | 436–457 | 12 | 435–456 | Hs histone 1, H2ak (HIST1H2AK) |
NM_003511 | 446–467 | 12 | 445–466 | Hs histone 1, H2al (HIST1H2AL) |
NM_003514 | 463–484 | 12 | 462–483 | Hs histone 1, H2am (HIST1H2AM) |
NM_003516 | 510–531 | 12 | 509–530 | Hs histone 2, H2aa (HIST2H2AA) |
NM_003523 | 411–432 | 12 | 412–435 | Hs histone 1, H2be (HIST1H2BE) |
NM_003529 | 439–460 | 12 | 440–462 | Hs histone 1, H3a (HIST1H3A) |
NM_003536 | 449–470 | 12 | 448–469 | Hs histone 1, H3h (HIST1H3H) |
NM_005319 | 709–730 | 12 | 708–729 | Hs histone 1, H1c (HIST1H1C) |
NM_005322 | 766–787 | 12 | 767–787 | Hs histone 1, H1b (HIST1H1B) |
NM_021018 | 444–465 | 12 | 445–466 | Hs histone 1, H3f (HIST1H3F) |
NM_175054 | 389–410 | 12 | 388–409 | Hs histone 4, H4 (HIST4H4) |
NM_175065 | 425–446 | 12 | 424–445 | Hs histone 2, H2ab (HIST2H2AB) |
NM_033445 | 472–493 | 10 | 471–492 | Hs histone 3, H2a (HIST3H2A) |
NM_003513 | 452–473 | 8 | 454–476 | Hs histone 1, H2ab (HIST1H2AB) |
NM_003521 | N/A | 8 | 421–441 | Hs histone 1, H2bm (HIST1H2BM) |
NM_003524 | 401–422 | 8 | 400–420 | Hs histone 1, H2bh (HIST1H2BH) |
NM_003533 | 453–474 | 8 | 452–472 | Hs histone 1, H3i (HIST1H3I) |
NM_003534 | N/A | 8 | 442–462 | Hs histone 1, H3g (HIST1H3G) |
NM_003540 | N/A | 8 | 348–368 | Hs histone 1, H4f (HIST1H4F) |
NM_003541 | 331–352 | 8 | 330–350 | Hs histone 1, H4k (HIST1H4K) |
NM_003543 | N/A | 8 | 349–369 | Hs histone 1, H4h (HIST1H4H) |
NM_003545 | N/A | 8 | 352–372 | Hs histone 1, H4e (HIST1H4E) |
NM_170745 | 441–462 | 8 | 440–460 | Hs histone 1, H2aa (HIST1H2AA) |
NM_003531 | 435–456 | 4 | 438–459 | Hs histone 1, H3c (HIST1H3C) |
NM_003532 | 438–459 | 4 | 441–459 | Hs histone 1, H3e (HIST1H3E) |
NM_005323 | 701–722 | -4 | 705–721 | Hs histone 1, H1t (HIST1H1T) |
NM_021065 | 436–457 | -10 | 314–335 | Hs histone 1, H2ad (HIST1H2AD) |
NM_005321 | 761–782 | -41 | 85–116 | Hs histone 1, H1e (HIST1H1E) |
NM_014372 | 1345–1366 | -42 | 1381–1389 | Hs ring finger protein 11 (RNF11) |