Table 4 Clustering of sequences of bacterial genomes using SPC, gSPC and TRIBE-MCL algorithms
K | cases | clusters | true positive | false positive | false negative | specificity | a posteriori sensitivity | a priori sensitivity |
|---|---|---|---|---|---|---|---|---|
SPC | ||||||||
2 | 646 | 157 | 5365 | 357 | 99 | 93.8 | 98.2 | 12.1 |
6 | 4652 | 794 | 34699 | 2635 | 2624 | 92.9 | 93.0 | 78.2 |
20 | 5072 | 637 | 35862 | 3840 | 5396 | 86.9 | 90.3 | 80.1 |
all NN | 4993 | 592 | 34375 | 4160 | 6241 | 89.2 | 84.6 | 77.5 |
TRIBE-MCL | ||||||||
4517 | 704 | 34563 | 2475 | 3042 | 93.3 | 91.9 | 77.9 | |
gSPC | ||||||||
6 | 4612 | 710 | 34631 | 2472 | 2365 | 93.3 | 93.6 | 78.2 |
20 | 4988 | 115 | 37574 | 2836 | 2948 | 93.0 | 92.7 | 84.7 |
All NN | 5043 | 18 | 37862 | 2968 | 3105 | 92.7 | 92.4 | 85.4 |