Table 9 Average running time (in seconds) per multiple alignment for the 180 sequence families of IRMBASE and for 141 sequence families in BAliBASE 2.1. Program runs were performed on a Linux workstation (RedHat 8.0) with an 3.2 GHz Pentium 4 processor and 2 GB Ram.
From: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Method | Average runtime on IRMBASE 1.0 | Average runtime on BAliBASE 2.1 |
|---|---|---|
DIALIGN-T | 2.36 | 1.38 |
DIALIGN 2.2 | 3.33 | 1.30 |
T-COFFEE 1.37 | 27.54 | 7.64 |
PROBCONS 1.09 | 12.37 | 2.66 |
POA V2 | 1.44 | 0.58 |
MUSCLE 3.5 | 9.37 | 0.60 |
CLUSTAL W 1.83 | 1.41 | 0.47 |